Journal Articles:

  1. K. E. White, Y. Chu, G. Gani, S. Ippolito, K. Barr, J. C. Thomas, A. Weber-Bargioni, K. Lau, Y. Gogotsi, P. S. Weiss. "Atomic-scale investigations of Ti3C2Tx MXene surfaces." Matter 7, 2609 (2024).
  2. J. C. Thomas, W. Chen, Y. Xiong, B. Barker, J. Zhou, W. Chen, A. Rossi, N. Kelly, Z. Yu, D. Zhou, S. Kumari, E. Barnard, J. Robinson, M. Terrones, A. Schwartzberg, D. F. Ogletree, E. Rotenberg, M. M. Noack, S. Griffin, A. Raja, D. Strubbe, G.-M. Rignanese, A. Weber-Bargioni, G. Hautier. "A substitutional quantum defect in WS2 discovered by high-throughput computational screening and fabricated by site-selective STM manipulation." Nature Communications 15, 3556 (2024).
  3. A. Rossi, R. Dettori, C. Johnson, J. Balgley, J. C. Thomas, L. Francaviglia, A. Schmid, K. Watanabe, T. Taniguchi, M. Cothrine, D. G. Mandrus, C. Jozwiak, A. Bostwik, E. Henriksen, A. Weber-Bargioni, and E. Rotenberg.. "Electronic Structure of RuCl3 - Graphene heterostructure: stable ferromagnetic interaction." Nano Letters 23, 8000 (2023).
  4. J. Zhou, J. C. Thomas, E. Barré, E. Barnard, A. Raja, S. Cabrini, K. Munechika, A. Schwartzberg, A. Weber-Bargioni. "Near-Field Coupling with a Nanoimprinted Probe for Dark Exciton Nanoimaging in Monolayer WSe2." Nano Letters 23, 4901 (2023).
  5. J. C. Thomas & A. Rossi, J. T. Küchle, E. Barré, Z. Yu, D. Zhou, S. Kumari, H.-Z. Tsai, E. Wong, C. Jozwiak, A. Bostwick, J. A. Robinson, M. Terrones, A. Raja, A. Schwartzberg, D. F. Ogletree, J. B. Neaton, M. F. Crommie, F. Allegretti, W. Auwärter, E. Rotenberg, A. Weber-Bargioni. "WS2 Band Gap Renormalization Induced by Tomonaga Luttinger Liquid Formation in Mirror Twin Boundaries." arXiv:2301.02721, (2023).
  6. J. C. Thomas, A. Rossi, D. Smalley, L. Francaviglia, Z. Yu, T. Zhang, S. Kumari, J. A. Robinson, M. Terrones, M. Ishigami, E. Rotenberg, E. S. Barnard, A. Raja, E. Wong, D. F. Ogletree, M. M. Noack, A. Weber-Bargioni. "Autonomous Scanning Probe Microscopy Investigations over WS2 and Au{111}." npj Computational Materials 8, 99 (2022).
  7. D. P. Goronzy, J. Staněk, E. Avery, H. Guo, Z. Bastl, M. Dušek, N. M. Gallup, S. Gün, M. Kučeráková, B. J. Lewandowski, J. Macháček, V. Šicha, J. C. Thomas, A. Yavuz, K. N. Houk, F. M. Daniman, E. Mete, A. N. Alexandrova, T. Baše, and P. S. Weiss. “Influence of Terminal Carboxyl Group on the Structure and Reactivity of Functionalized m-Carboranethiolate Self-Assembled Monolayers.” Chemistry of Materials 32, 6800 (2020).
  8. J. C. Thomas, D. P. Goronzy, A. C. Serino, H. Auluck, O. Irving, W. Jimenez-Izal, J. Deirmenjian, J. Macháček, P. Sautet, A. Alexandrova, T. Baše, and P. S. Weiss. “Acid-Base Control of Valency within Carboranedithiol Self-Assembled Monolayers: Molecules Do the Can-Can.” ACS Nano 12, 2211 (2018).
  9. J. C. Thomas, D. P. Goronzy, K. Dragomiretskiy, D. Zosso, J. Gilles, S. J. Osher, A. L. Bertozzi, and P. S. Weiss. “Mapping Buried Hydrogen-Bonding Networks.” ACS Nano 10, 5446 (2016).
  10. M. L. Gethers, J. C. Thomas, S. Jiang, N. O. Weiss, X. Duan, W. A. Goddard, III, and P. S. Weiss. “Holey Graphene as a Weed Barrier for Molecules.” ACS Nano 9, 10909 (2015).
  11. J. C. Thomas, I. Boldog, H. S. Auluck, P. J. Bereciartua, M. Dušek, J. Macháček, Z. Bastl, P. S. Weiss, and T. Baše. "Self-Assembled p-Carborane Analog of p-Mercaptobenzoic Acid on Au{111}." Chemistry of Materials 27, 5425 (2015).
  12. J. C. Thomas, J. J. Schwartz, J. N. Hohman, S. A. Claridge, H. S. Auluck, A. C. Serino, A. M. Spokoyny, G. Tran, K. F. Kelly, C. A. Mirkin, J. Gilles, S. J. Osher, and P. S. Weiss. “Defect-Tolerant Aligned Dipoles within Two-Dimensional Plastic Lattices.” ACS Nano 9, 4734 (2015).
  13. J. N. Hohman, J. C. Thomas, Y. Zhao, H. Auluck, M. Kim, W. Vijselaar, S. Kommeren, A. Terfort, and P. S. Weiss. "Exchange Reactions between Alkanethiolates and Alkaneselenols on Au{111}." Journal of the American Chemical Society 126, 8110 (2014).
  14. J. Kim, Y. S. Rim, Y. Liu, A. C. Serino, J. C. Thomas, H. Chen, Y. Yang, and P. S. Weiss. “Interface Control in Organic Electronics Using Mixed Monolayers of Carboranethiol on Isomers.” Nano Letters 14, 2946 (2014).
  15. S. A. Claridge, J. C. Thomas, M. A. Silverman, J. J. Schwartz, Y. Yang, C. Wang, and P. S. Weiss. "Differentiating Amino Acid Residues and Side Chain Orientations in Peptides Using Scanning Tunneling Microscopy." Journal of the American Chemical Society 135, 18528 (2013).
  16. S. A. Claridge, W.-S. Liao, J. C. Thomas, Y. Zhao, H. H. Cao, S. Cheunkar, A. C. Serino, A. M. Andrews, and P. S. Weiss. "From the Bottom Up: Dimensional Control and Characterization in Molecular Monolayers." Chemical Society Reviews 42, 2725 (2013).
  17. Y. B. Zheng, B. K. Pathem, J. N. Hohman, J. C. Thomas, M. H. Kim, and P. S. Weiss. “Photoresponsive Molecules in Well-Defined Nanoscale Environments.” Advanced Materials 25, 302 (2013).
  18. J. N. Hohman, M. Kim, B. Schüpbach, M. Kind, J. C. Thomas, A. Terfort, and P. S. Weiss. "The Dynamic Double Lattice of 1-Adamantaneslenolate Self-Assembled Monolayers on Au{111}." Journal of the American Chemical Society 133, 19422 (2011).
  19. J. C. Thomas, E. R. Tiekink, J. A. Walmsley. "[4’-(4-Aminophenyl)-2,2’:6’,2”-terpyridine] chloridopalladium (II) chloride." Acta Crystallographica Section E: Structure Reports Online 67, m733 (2011).
  20. A. R. Kurland, P. Han, J. C. Thomas, A. N. Giordano, and P. S. Weiss. "Adsorbate-Promoted TunnelingElectron- Induced Local Faceting of D/Pd110-(1×2)." Journal of Physical Chemistry Letters 1, 2288 (2010).

Submitted or In Preparation:

  1. W. Chen, J. C. Thomas, Y. Xiong, Z. Yu, D. Zhou, S. Kumari, Z. Dai, J. A. Robinson, M. Terrones, A. Raja, S. Griffin, A. Weber-Bargioni, G. Hautier. "First-Principles and experimental co-investigation of sulfur divacancy and nearest neighbor vacancy complexes in monolayer WS2." in preparation.
  2. K. Nisi, J. C. Thomas, S. Levashov, T. Taniguchi, K. Watnabe, J. Eichhorn, A. Weber-Bargioni, C. Kastl, A. W. Holleitner. "Scanning tunneling characterization of decoupled sulfur vacancies in van der Waals heterostructures." in preparation.
  3. J. Liang, K. Ma, E. Walker, C. Johnson, X. Zhao, T. Terlier, J. C. Thomas, J. Wan, N. Dale, C. Jozwiak, A. Bostwick, E. Rotenberg, J. Jang, M. Salmeron, P. D. Ashby, J. Kim, H. Zheng, A. Weber-Bargioni, T. Beechem, M. P. Sherburne, Z. Y. Al Balushi. "Spatially enhanced electrostatic doping in graphene realized via heterointerfacial precipitated metals." submitted.

Book Chapters:

  1. A. Rossi, D. Smalley, M. Ishigami, E. Rotenberg, A. Weber-Bargioni, and J. C. Thomas. "Autonomous Hyperspectral Scanning Tunneling Spectroscopy," Taylor & Francis 2023, Chapter 12 ISBN 978–1032314655 (DOI: 10.1201/9781003359593).

Thesis:

  1. J. C. Thomas. "Probing Buried and Exposed Interfaces with Submolecular Precision." (2015).